Experimental Physiology
	

Celebrating 100 years
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
 QUICK SEARCH:   [advanced]


     


Experimental Physiology 91.5 pp 807-819
DOI: 10.1113/expphysiol.2006.033506
© The Physiological Society 2006
This Article
Right arrow Abstract Freely available
Right arrow Full Text (PDF)
Right arrow All Versions of this Article:
91/5/807    most recent
expphysiol.2006.033506v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Guzy, R. D.
Right arrow Articles by Schumacker, P. T.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Guzy, R. D.
Right arrow Articles by Schumacker, P. T.
Related Collections
Right arrow Symposia Papers
Right arrow Respiratory

Symposium Reports

Novel partners and mechanisms in oxygen sensing

Oxygen sensing by mitochondria at complex III: the paradox of increased reactive oxygen species during hypoxia

Robert D. Guzy1 and Paul T. Schumacker1

1 Department of Pediatrics, Division of Neonatology, North-western University, Chicago, IL 60611, USA

Abstract

All eukaryotic cells utilize oxidative phosphorylation to maintain their high-energy phosphate stores. Mitochondrial oxygen consumption is required for ATP generation, and cell survival is threatened when cells are deprived of O2. Consequently, all cells have the ability to sense O2, and to activate adaptive processes that will enhance the likelihood of survival in anticipation that oxygen availability might become limiting. Mitochondria have long been considered a likely site of oxygen sensing, and we propose that the electron transport chain acts as an O2 sensor by releasing reactive oxygen species (ROS) in response to hypoxia. The ROS released during hypoxia act as signalling agents that trigger diverse functional responses, including activation of gene expression through the stabilization of the transcription factor hypoxia-inducible factor (HIF)-{alpha}. The primary site of ROS production during hypoxia appears to be complex III. The paradoxical increase in ROS production during hypoxia may be explained by an effect of O2 within the mitochondrial inner membrane on: (a) the lifetime of the ubisemiquinone radical in complex III; (b) the relative release of mitochondrial ROS towards the matrix compartment versus the intermembrane space; or (c) the ability of O2 to access the ubisemiquinone radical in complex III. In summary, the process of oxygen sensing is of fundamental importance in biology. An ability to control the oxygen sensing mechanism in cells, potentially using small molecules that do not disrupt oxygen consumption, would open valuable therapeutic avenues that could have a profound impact on a diverse range of diseases.

(Received 28 June 2006; accepted after revision 17 July 2006; first published online 20 July 2006)
Corresponding author P. T. Schumacker: Department of Pediatrics, 303 East Chicago Ave, Ward Building 12-191, Chicago, IL 60611, USA. Email: p-schumacker{at}northwestern.edu

The cells of the body require energy for self-repair, upkeep and maintenance, and for sustaining their tissue- or organ-specific functions. The majority of these processes are endothermic and are therefore coupled to the hydrolysis of ATP, which provides the necessary free energy. The cellular pool of ATP and other high-energy phosphates provides a renewable energy supply that is required for survival. The majority of cells maintain the supply of ATP through oxidative phosphorylation, which couples the oxidation of metabolic substrates to the synthesis of ATP from ADP and inorganic phosphate in the mitochondria. That process consumes oxygen in proportion to the rate of ATP utilization by the cells. Hence, increases in metabolic activity are associated with increases in the rate of oxygen utilization. Multicellular organisms have developed elaborate systems for supplying O2 to each cell in accordance with its metabolic activity and for adjusting the delivery when the metabolic needs change, as occurs in exercise. Although cells have a limited ability to generate ATP in the absence of oxygen, the loss of O2 supply, even briefly, threatens survival. Not surprisingly, organisms have evolved a complex array of mechanisms to sustain the supply of oxygen to the cells of the body and to protect themselves in the event that oxygen availability becomes limiting. The ability to sense the level of O2, and to sound the alarm when it falls, is therefore a fundamental requirement for survival of multicellular organisms.

Given the potentially lethal consequences of oxygen deprivation, organisms have developed a number of responses to defend the oxygen supply in response to changes in the environment, or in response to diseases that undermine the transport of O2 to tissues. Well-known examples of specialized oxygen sensing systems include the arterial chemoreceptors that monitor the level of blood oxygenation and that signal the respiratory system to increase the level of alveolar ventilation when arterial partial pressure of O2 (PO2) decreases. Similarly, cells of the liver and kidney adjust the secretion of the hormone erythropoietin in order to regulate the number of circulating erythrocytes to assure adequate tissue oxygenation. Some cells even have the ability to downregulate their oxygen utilization during hypoxia, allowing them to survive in the face of a more severe limitation in O2 supply (Land et al. 1993; Chandel et al. 1997; Budinger et al. 1998). These and other specialized responses support the basal supply of oxygen to tissues, and allow the organism to respond to changes in the environment or in the levels of demand. However, all cells of the body have the ability to detect a decrease in oxygen tension and to initiate gene transcription by activating the hypoxia-inducible factors (Maxwell et al. 1993; Wang & Semenza, 1993).

Although the ventilatory and cardiovascular systems respond immediately to hypoxia or to a change in O2 supply or demand, many of the responses to hypoxia require hours, days or even weeks to be effected. For example, regional hypoxia within muscle triggers the secretion of vascular growth factors, which mediate the growth of new capillaries into the region over a period of days. Decreases in arterial blood oxygen levels activate the transcription of erythropoietin, which stimulates the synthesis and maturation of new erythrocytes over a period of a week or two (Goldwasser et al. 1989). Cellular hypoxia leads to the upregulation of genes involved in glucose uptake, glucose metabolism, cell survival, vascular tone, cytoskeletal organization, apoptosis, extracellular matrix metabolism, cell adhesion and iron metabolism (Wykoff et al. 2000; Hu et al. 2003; Wykoff et al. 2004; Gunton et al. 2005; Greijer et al. 2005). These responses require activation of transcription and subsequent translation of genes, which requires time. Finally, the end-point effects of some hypoxia-induced gene expression, such as angiogenesis, vascular remodelling, cell migration and proliferation, require hours or days to reach completion. Physiologically important responses that cannot be activated within seconds must therefore be initiated early, in anticipation of a condition that could threaten survival if it were to progress. At least some of the responses described above are aimed at preventing or lessening the severity of hypoxia. Thus, to confer protection, these responses must be regulated by a control system that is initiated at the earliest stages of hypoxia. Delaying activation of these systems until cell metabolism becomes limited by oxygen availability is like delaying the activation of a fire alarm until a building is fully engulfed in flames. Hence, a functional requirement for a cellular oxygen sensor is that it must be capable of detecting subtle changes in the level of oxygenation and of initiating a proportional activation of the cellular response.

Transcriptional responses to hypoxia

The principal regulator of transcriptional responses to hypoxia is the hypoxia-inducible factor (HIF) family of transcription factors (Semenza et al. 1991, 1994; Semenza & Wang, 1992). Hypoxia-inducible factor is a heterodimeric complex comprised of an oxygen-regulated {alpha} subunit (HIF-{alpha}) and a constitutively expressed ß subunit, also referred to as the arylhydrocarbon receptor nuclear translocator (ARNT; Semenza, 2000). Hypoxia-inducible factor-{alpha} is constitutively transcribed, and the protein is continuously translated. However, under normoxia it is rapidly degraded by the ubiquitin–proteasome system (Huang et al. 1996, 1998; Salceda & Caro, 1997). Attempts to measure HIF-1 by immunoblot assays of whole-cell protein lysates from normoxic cells reveal HIF-ß protein, but HIF-{alpha} protein levels are less evident because the {alpha} subunit is continuously degraded. Under sustained hypoxia, degradation of the HIF-{alpha} subunit is inhibited, allowing the protein to accumulate, heterodimerize and translocate to the nucleus. There, it binds to specific (hypoxia response element, HRE) consensus sequences in DNA as it assembles in association with other proteins comprising the transactivation complex (Ebert & Bunn, 1998; Semenza, 1999). Reoxygenation of hypoxic cells is associated with a rapid disappearance of the HIF-{alpha} protein from the cell, subsequent to its ubiquitin labelling and proteasome degradation (Huang et al. 1998). Two oxygen-regulated members of the HIF family include HIF-1 and HIF-2, which are similarly regulated by oxygen (Talks et al. 2000; Sowter et al. 2003; Hu et al. 2003). While HIF-1 and HIF-2 exhibit overlap in their ability to regulate a large number of genes, recent work reveals that their functions are not identical, and that a number of important differences exist in their targets (Hu et al. 2003; Park et al. 2003; Wang et al. 2005; Aprelikova et al. 2006).

Virtually every cell in the body is capable of sensing oxygen and regulating HIF-mediated transcription in response to O2 (Maxwell et al. 1993; Wang & Semenza, 1993). This point is illustrated if one transfects any cell in the body with a reporter gene construct, driven by an HRE in its promoter region. If the cell is subsequently challenged with hypoxia, expression of the reporter gene will be detected. Hypoxia-inducible factor is required for embryonic development, and embryos with homozygous knockout of HIF-1 (Iyer et al. 1998; Ryan et al. 1998) or ARNT (Maltepe et al. 1997) die at mid-gestation.

Hypoxia-inducible factor was discovered by Semenza and colleagues, and identified as an oxygen-dependent transcription factor regulated post-transcriptionally at the level of protein stability (Semenza et al. 1991; Wang & Semenza, 1995). Moreover, a specific region of the HIF-{alpha} subunit was shown to be required for its responsiveness to hypoxia (Huang et al. 1996; Pugh et al. 1997). Deletion of the oxygen-dependent degradation (ODD) domain from a reporter construct abolished its sensitivity to hypoxia, indicating that the ODD was involved in its regulation by O2. A subsequent discovery by Peter Ratcliffe's laboratory at Oxford identified the von Hippel-Lindau (vHL) protein as the E3 recognition component of the ubiquitin ligase responsible for ubiquitin labelling prior to its degradation (Maxwell et al. 1999; Cockman et al. 2000). Von Hippel-Lindau disease manifests by the development of haemangioblastomas and renal clear cell carcinomas that are highly vascular and exhibit high levels of HIF activation (Mole et al. 2001). This phenotype can be explained by the genetic loss of vHL protein, which is required for the normal degradation of HIF. However, the mechanism responsible for regulating the interaction between HIF and vHL protein in accordance with oxygen still was not known at that point. The search for the mechanism of protein regulation culminated in the discovery that the interaction between HIF-{alpha} and vHL protein was controlled by the hydroxylation of highly conserved proline residues within the ODD (Jaakkola et al. 2001; Ivan et al. 2001). Hydroxylation of these residues by a family of prolyl hydroxylases facilitates interaction with the ubiquitin ligase and therefore controls protein stability. Consequently, regulation of prolyl hydroxylase activity by oxygen is responsible for controlling the activation of HIF.

Regulation of HIF by prolyl hydroxylases

Prolyl hydroxylases (PH) are a family of mixed function oxidases involved in the post-translational modification that signals HIF-{alpha} for degradation (Tanimoto et al. 2000; Clifton et al. 2001; Epstein et al. 2001; Bruick & McKnight, 2001; Berra et al. 2003; Appelhoff et al. 2004). These enzymes require 2-oxoglutarate ({alpha}-ketoglutarate) and O2 as substrates, and they require non-haem iron as a cofactor. Chemical inhibitors that block the activity of PH, such as iron chelators that deprive the enzyme of Fe2+, or dimethyloxallyl glycine (DMOG) that competes with 2-oxoglutarate for binding at the hydroxylase, prevent HIF proline hydroxylation and cause accumulation of HIF-{alpha} and activation of HIF-dependent gene expression (Ivan et al. 2002). The fact that PH utilizes O2 as a substrate raises the question of whether PH functions as the O2 sensor regulating HIF activation (Kaelin, 2003, 2005; Schumacker, 2005). In vitro studies assessing the oxygen dependence of PH initially revealed a Km for O2 near 250 µM, close to the level of oxygen expected in a solution equilibrated with room air (Hirsilae et al. 2003). If this were identical with the Km in vivo, one would predict that PH would exhibit a progressive decrease in activity throughout the physiological range of O2 levels. However, studies of the O2 dependence of HIF stabilization show that it begins to be activated at oxygen levels below 5%, with maximal activation near 0.5% O2 (Jiang et al. 1996). One explanation for these discrepancies is that PH in the intact cell may be regulated differently from PH in isolation. Moreover, these in vitro studies utilized a small peptide derived from HIF-{alpha} as a substrate rather than the full-length protein, which may have introduced important differences in the activity of the enzyme (Hirsilae et al. 2003). A fuller understanding of how PH activity is regulated requires the ability to monitor PH activity (i.e. ODD proline hydroxylation) in the intact cell. This is technically challenging, since the levels of HIF in the cell are low, even under hypoxic conditions. Overexpression of an ODD-containing protein can be employed to remedy that situation, but excessive levels of ODD protein can potentially disrupt normal regulation by overpowering the degradation systems at the PH or vHL protein steps. Work presently underway will undoubtedly address this problem in the future.

Mitochondrial oxygen sensing

While it is clear that PH cannot function without oxygen, an alternative possibility is that another oxygen sensor within the cell is responsible for regulating PH activity during physiological hypoxia. We proposed that mitochondria function as O2 sensors that regulate a wide range of cellular responses to hypoxia, ranging from transcription factor activation to the control of vascular tone in the pulmonary circulation (Chandel et al. 1998). The proposed relationship between mitochondria and PH activity is depicted in Fig. 1. Mitochondria have long been suspected to be the site of oxygen sensing, since they bind O2 at cytochrome oxidase and they represent the primary site of oxygen consumption in the cell (Bunn & Poyton, 1996). However, a conceptual hurdle has been that cytochrome oxidase activity, as indicated by the rate of oxygen consumption by isolated mitochondria, does not become limited by O2 availability until the oxygen concentration falls to about 1 µM (<< 0.1% O2). This behaviour would appear to make the electron transport chain suitable as a detector of anoxia, but unsuitable as a sensor of moderate hypoxia. Clearly, a sensor of anoxia would be incapable of triggering the anticipatory responses described above.


Figure 1
View larger version (33K):
[in this window]
[in a new window]
 
Figure 1.  Regulation of HIF in normoxia and hypoxia
Our model proposes that ROS generated by the mitochondrial electron transport chain contribute to the regulation of HIF-{alpha} stabilization during hypoxia. PHD, Prolylhydroxylase; FIH, Factor Inhibiting HIF; VHL, von Hippel-Lindau. Reprinted from Critical Care Medicine 33(12) S423-425, Hypoxia-inducible factor-1 (HIF-1) by Paul T. Schumacker, PhD, with permission from Lippincott Williams & Wilkins.

 
Some insight into the potential role of mitochondria and oxygen sensing comes from the work of David Wilson, who examined the relationship between oxygen concentration and mitochondrial electron flux in isolated mitochondria (Wilson et al. 1979, 1988; Erecinska & Wilson, 1982; Rumsey et al. 1990). He observed that oxygen consumption remained remarkably constant as PO2 decreased, until the oxygen tension reached near-anoxic levels. Those measurements were consistent with an ‘apparent Km for cytochrome oxidase of < 1 mmHg. However, as the PO2 was decreased from air saturation levels down to the apparent Km, they observed a corresponding increase in the reduction state of cytochrome c, the electron donor to cytochrome oxidase. The fact that cytochrome c became more reduced during progressive hypoxia, while the electron flux through the oxidase did not change, suggested that hypoxia itself was inhibiting the function of the oxidase. Those experiments demonstrated that hypoxia could elicit changes in the redox state of electron transport proteins upstream from the oxidase. Their studies did not link this phenomenon to a cellular response. However, the implication was that redox changes in the electron transport chain could theoretically be coupled to second messenger systems, allowing the mitochondria to function as oxygen sensory organelles capable of triggering functional responses.

Subsequently, workers in our laboratory demonstrated that isolated cytochrome oxidase responds to hypoxia by decreasing its maximal turnover rate (Chandel et al. 1996, 1997). This alters the redox state of more proximal complexes in the electron transport chain, potentially allowing the oxidase to function as an oxygen sensor, and to signal by generating reactive oxygen species. This change in cytochrome oxidase activity during hypoxia was linked to a downregulation of metabolic activity in a variety of different cell types (Chandel et al. 1995; Budinger et al. 1998). The decrease in respiration during prolonged hypoxia, a response termed ‘hypoxic conformance of metabolism’, was found to be the result of a decrease in ATP utilization by the cells rather than a limitation in the mitochondrial ability to generate ATP. Based on those findings, we hypothesized that mitochondria generate a signal during hypoxia that elicits a decrease in metabolic activity by the cell. This suppression of metabolic activity leads to a decrease in ATP hydrolysis, leading to a decrease in mitochondrial respiration as a consequence of the lesser return of ADP to the mitochondria.

If cytochrome oxidase were solely responsible response for detecting hypoxia, one would predict that mitochondrial inhibitors that block activity of cytochrome oxidase, or that prevent electron transport from cytochrome c to the oxidase, would abolish the oxygen sensing function. Yet antimycin A, which prevents electron transport from complex III to cytochrome c, and cyanide, which blocks complex IV, do not inhibit the HIF-1 response to hypoxia (Gleadle et al. 1995b; Chandel et al. 1998). Stated differently, in the presence of antimycin A, the more distal complexes remain in a fully oxidized state yet the cell can still respond to hypoxia. Those observations suggested that changes in the redox state of cytochrome oxidase (induced by hypoxia) were not the primary mechanism regulating HIF activation. Our findings revealed that functionality within the middle but not the distal region of the electron transport chain is required for oxygen sensing, although they did not rule out the possibility that redox changes at cytochrome oxidase could contribute secondarily.

Further studies investigating the involvement of the electron transport chain in oxygen sensing revealed that a functional electron transport chain was required for HIF stabilization in hypoxia. This was based on the observation that electron transport inhibitors, including rotenone (an inhibitor of the distal end of complex I), myxothiazol and stigmatellin (inhibitors of the upstream end of complex III), were capable of blocking the stabilization of HIF-1{alpha} during hypoxia (Chandel et al. 1998; Agani et al. 2000; Guzy et al. 2005), as were genetic deletions in complex I (DeHaan et al. 2004). Although the pharmacological agents blocked the stabilization of HIF-1{alpha} during hypoxia, they did not prevent HIF-1{alpha} stabilization in response to the iron chelator deferroximine (DFO). In addition, inhibitors acting at complex IV did not appear to inhibit the response to hypoxia (Gleadle et al. 1995a,b). To avoid the use of pharmacological agents that might have non-specific effects on the cell, we utilized cells that had been depleted of their mitochondrial DNA ({rho}0 cells; Chandel et al. 1998; Chandel & Schumacker, 1999; Guzy et al. 2005; Mansfield et al. 2005). The mitochondrial DNA encodes specific subunit components of complexes I, III, IV and V that are required for electron transport and ATP production. Cells lacking mitochondrial DNA do not exhibit oxidative phosphorylation and they do not respire because the electron transport chain is dysfunctional (Chandel & Schumacker, 1999). Hence, they are forced to supply all of their ATP needs through anaerobic glycolysis. These cells failed to stabilize HIF-1{alpha} during hypoxia, yet they still were able to respond to hypoxia mimetics, such as DFO. Those findings were consistent with the notion that at least some functionality in the electron transport chain was required for activating HIF during hypoxia.

Two reports challenged those findings. In one study, Vaux and co-workers incubated {rho}0 cells in hypoxic conditions and found that they were still capable of stabilizing HIF-1{alpha} (Vaux et al. 2001). That report suggested that the mitochondrial electron transport was not required for oxygen sensing, and that results obtained using mitochondrial inhibitors may have been due to non-specific toxic effects. However, careful analysis of that paper reveals that they utilized virtual anoxia (0% O2) to test the hypoxic responsiveness, but did not include studies of physiological hypoxia (1–5% O2). Stabilization of HIF in hypoxia normally begins at ~5% O2 and increases exponentially as the O2 concentration falls towards zero (Jiang et al. 1996). Based on work done after publication of the paper by Vaux et al. (2001), we now know that prolyl hydroxylase requires oxygen as a substrate for hydroxylation of HIF-1{alpha} (Ivan et al. 2001; Jaakkola et al. 2001). Under anoxic conditions, stabilization of HIF will occur even if the mitochondrial oxygen sensor is disabled by pharmacological or genetic means (Schroedl et al. 2002). Armed with the present understanding of the role of prolyl hydroxylase in the regulation of HIF, we now know that {rho}0 cells will stabilize HIF-1{alpha} during anoxia, but fail to activate HIF during physiological hypoxia. In a second study, challenging our report (Chandel et al. 1998), Srinivas and co-workers obtained {rho}0 cells that had been characterized previously by King & Attardi (1989) and examined their response to graded levels of hypoxia in the physiological range (Srinivas et al. 2001). Surprisingly, those cells were capable of activating HIF under moderate hypoxia. However, a later analysis of the same cell line revealed significant contamination with mycoplasma, and elimination of the microbial contamination abolished its sensitivity to physiological hypoxia (personal communication, M. Celeste Simon, University of Pennsylvania). It therefore appears that the contamination of a {rho}0 cell line with micro-organisms can potentially restore responsiveness to hypoxia. In subsequent studies, we have further confirmed that {rho}0 cells that are free from microbial contamination fail to respond to hypoxia, but are still capable of responding to anoxia (Guzy et al. 2005; Mansfield et al. 2005; Brunelle et al. 2005).

Studies using pharmacological inhibitors suffer from the problem that it is difficult to rule out the possibility that non-specific effects may contribute to the response, or that unknown effects of the drug may alter the response. The {rho}0 cells are somewhat more specific, yet the generation of these cells still requires long-term incubation in ethidium bromide, a potential mutagen. To address these weaknesses it is necessary to develop alternative genetic models to test the hypothesis.

In eukaryotes, complex III of the electron transport chain consists of an assembly of 11 proteins encoded by nuclear and mitochondrial genes (Iwata et al. 1998). The function of complex III is to accept electrons from ubiquinol, to transfer these to cytochrome c, and to translocate protons across the inner mitochondrial membrane (Fig. 2). A central component of complex III involves the Q (ubiquinone) cycle. At complex I and II, a pair of reducing equivalents is transferred to ubiquinone, yielding ubiquinol. However, cytochrome c and cytochrome oxidase accept single electrons sequentially. Within complex III, the Q cycle performs the important role of converting the paired transfers of complex I and II into sequential transfers needed for complex IV (Saraste, 1999). A ubiquinol molecule binds to complex III at the Qo site, so-named for its location near the outer surface of the inner membrane. A single electron is transferred to the Rieske iron–sulphur protein, yielding the univalently reduced ubisemiquinone at that site. The iron–sulphur group of the Rieske protein is situated on a hinged region that rotates, allowing the electron to be transferred to the cytochrome c1 centre. Meanwhile, the ubisemiquinone transfers its electron to the b cytochrome, allowing a new ubiquinol molecule to bind. A second quinone reduction site on the inner surface of the membrane (Qi) allows electrons from the b cytochrome to be transferred, regenerating ubiquinol. Thus, in a full cycle, two quinol molecules are consumed at the Qo site, two electrons are transferred sequentially to cytochrome c, and a pair of electrons is transferred to generate ubiquinol at the Qi site. This process is coupled to the transfer of four protons from the matrix to the intermembrane space, contributing to the transmembrane electrochemical gradient (Yu et al. 1998; Trumpower, 2002; Hunte et al. 2003).


Figure 2
View larger version (44K):
[in this window]
[in a new window]
 
Figure 2.  Schematic summary of the function of complex III in mitochondria
Cyt c, cyctochrome c; Cyt b, cytochrome b; QH2, ubiquinol; QH, ubisemiquinone; Rieske, iron sulphur protein. Reprinted from Cell Metabolism: 1·12, Guzy et al. Mitochondrial complex III is required for hyproxia-induced ROS production and HIF-lá stabilization, 401-408 (2005), with permission from Elsevier.

 
Mitochondria have long been known to generate reactive oxygen species (Jensen, 1966). As described above, a quasi-stable ubisemiquinone radical is repeatedly generated at both the Qo and Qi sites during the electron transport process. Molecular oxygen, a lipophilic molecule dissolved in the hydrophobic environment within the membrane, is highly electrophilic and can potentially capture the electron from ubisemiquinone. The probability of such an event increases as the lifetime of the semiquinone radical increases (Turrens et al. 1985; Rana et al. 2000; Sun & Trumpower, 2003). The capture of an electron by O2 yields superoxide, a reactive molecule that can potentially act in either a signalling role or as a non-specific oxidizing agent capable of contributing to cell damage (Turrens, 2003). The mitochondrial inhibitors myxothiazol and stigmatellin obstruct the binding of ubiquinol at the Qo site, and therefore prevent electron transfer to the Rieske protein and generation of ubisemiquinone at either Qo or Qi. Hence, ROS production at complex III is significantly decreased by these inhibitors (Turrens et al. 1985). By contrast, the mitochondrial inhibitor antimycin A acts at the Qi site, preventing the quinone from binding. In the presence of antimycin A, the b cytochromes remain reduced, which prevents oxidation of ubisemiquinone at the Qo site and correspondingly obstructs electron flux through the Rieske protein. The increase in the lifetime of ubisemiquinone at Qo during antimycin A treatment therefore causes a marked increase in superoxide generation at that site (Turrens et al. 1985). In summary, myxothiazol, stigmatellin and antimycin A all inhibit mitochondrial respiration because they prevent electron transfer to the Rieske protein, yet the former two compounds decrease ROS production while the latter increases it.

The electrical potential across the inner mitochondrial membrane normally ranges from 180 to 200 mV, with the matrix negative relative to the intermembrane space (Wallace, 2001). It is therefore likely that superoxide anion released from the Qo site would migrate to the intermembrane space. Superoxide generated at the Qi site would be likely to contribute to oxidant stress in the matrix compartment. Superoxide dismutase in the matrix (Mn-SOD) or the intermembrane space (Cu,Zn-SOD) would dismute superoxide to hydrogen peroxide, which has the capacity to cross membranes.

A measure of intracellular ROS production can be obtained by superfusing cells on an inverted fluorescence microscope with media containing the probe dichlorofluorescein diacetate at low concentration, typically 5 µM. Basal oxidation of the probe by various processes in the cell yields the fluorescent product dichlorofluorescin (DCF), which accumulates and can be observed in fluorescence images. The overall cellular intracellular fluorescence in that case represents a balance between the rate of oxidation of the probe (tending to increase fluorescence intensity) and the rate of leakage of oxidized probe from the cell (which decreases fluorescence as it is carried away by the continuous superfusion). Under control conditions, a steady state can be reached wherein the concentration of oxidized probe, and thus the intracellular fluorescence intensity, remains stable over time. If the gas bubbling the media is then switched to a hypoxic mixture, a progressive increase in the intracellular fluorescence is observed over the following 2–20 min (Chandel et al. 1998; Vanden Hoek et al. 1998; Waypa et al. 2002). This suggests that hypoxia causes an increase in the rate of oxidation in the cell. If the oxygen concentration is subsequently returned to normoxia, the intracellular fluorescence decreases, which can be explained by a decrease in the rate of oxidation and a progressive leakage of the oxidized fluorescent dye from the cell. In cardiomyocytes studied in this manner, Duranteau d co-workers observed that the extent of increase in fluorescence was proportional to the severity of hypoxia, such that greater increases were seen with 1% O2 compared with 3 or 5% (Duranteau et al. 1998). These responses were attenuated by rotenone and thenoyltrifluoroacetone (TTFA), inhibitors that block the generation of ubiquinol at complex I and II, respectively. These findings suggested that hypoxia increases ROS production at complex III in the mitochondria. This increase in ROS production was paradoxical, since the concentration of O2, a substrate for ROS production, is decreased under hypoxia. This finding was unexpected, and it reasonably raised questions about the veracity of the data provided by DCF. For example, could the increase in DCF fluorescence be the result of a decrease in the leakage of oxidized probe from the cells during hypoxia? A major weakness of this probe is that the fluorescence signal depends on the concentration of the dye, which can potentially be influenced by a variety of factors (Hockberger et al. 1999).

Addressing this problem required development of a new class of sensors capable of providing a ratiometric measure of redox status. The importance of ratiometric performance was first illustrated in the field of calcium signalling, where a major advance was achieved with the development of fura-2, an ionized Ca2+ sensor (Grynkiewicz et al. 1985). That probe exhibits ratiometric behaviour, such that its emission (510 nm) during excitation at 340 versus 380 nm changes reciprocally with the ionized calcium concentration. The advantage of a ratiometric sensor is that its measure is independent of the concentration of the probe or the intensity of the excitation. We utilized a protein-based Fluorescence Resonance Energy Transfer (FRET) sensor termed HSP-FRET to assess oxidant stress in cells subjected to hypoxia (Guzy et al. 2005). That sensor consists of cyan- and yellow-fluorescent proteins (CFP, YFP) linked by the regulatory domain from a redox-sensitive bacterial heat shock protein (HSP-33). In bacteria, the chaperone activity of HSP-33 is controlled by redox conditions by a cysteine thiol-containing regulatory domain (Graf et al. 2004; Jakob et al. 1999). Under basal conditions in the cell, the thiol groups remain reduced and chaperone activity is inhibited; oxidation of the cysteine thiols by exogenous oxidant stress causes dithiol formation and functional activation of the protein. FRET sensors produce ratiometric data because changes in the conformation of the hinge region results in a change in Forster energy transfer from CFP to YFP. In this regard, separation of the fluorophores causes an increase in CFP intensity and decrease in YFP intensity, whereas approximation of CFP and YFP causes the opposite response. With HSP-FRET, approximately 4% of the fluorescence of YFP under baseline conditions is attributable to energy transfer from CFP. In cells transfected with HSP-FRET, hypoxia (1.5% O2) caused a progressive unfolding of the protein, which was similar to the response elicited by addition of exogenous H2O2. Under anoxic conditions, this response was abrogated. These findings supported the notion that hypoxia elicits an increase in oxidant signalling in cells (Fig. 3). Moreover, overexpression of catalase, using a recombinant adenovirus, attenuated this response, as did addition of chemical antioxidants (Guzy et al. 2005). These findings provide strong support for the conclusion that physiological hypoxia elicits an increase in oxidant production in a wide range of cell types.


Figure 3
View larger version (32K):
[in this window]
[in a new window]
 
Figure 3.  Oxidation of the redox sensor HSP-FRET during hypoxia (1.5% O2, shown as an increase in ratio) in embryonic culture cells
Catalase overexpression attenuates this response in multiple cell types. Reprinted from Cell Metabolism, 1·12, Guzy et al, Mitochondrial complex III is required for hyproxia-induced ROS production and HIF-lá stabilization, 401-408 (2005), with permission from Elsevier.

 
To address the concern that pharmacological agents may introduce non-specific effects, Guzy and co-workers then used a stable suppression of the Rieske iron–sulphur protein in multiple cell lines using stable transfection with a short hairpin RNA inhibition construct (Guzy et al. 2005). Briefly, cells were electroporated with a DNA construct encoding a short interfering RNA segment designed to inhibit expression of the Rieske protein. The vector containing this unit also carried a gene conferring resistance to the antibiotic neomycin. After transduction, the cells were selected by addition of the antibiotic agent, thereby eliminating cells that had not stably incorporated the antibiotic gene into their DNA. Individual clones of cells were then screened, revealing marked differences in the efficacy of different targeting constructs and, surprisingly, among different clones from the same construct. Individual clones were then studied in terms of their ability to respond to hypoxia by HIF-{alpha} stabilization. Interestingly, cells with significant knockdown of the Rieske protein showed selective loss in responsiveness to hypoxia, yet these cells were not different from mock knockdown controls in their response to the hypoxia mimetics DFO or cobalt chloride, the prolyl hydroxylase inhibitor dimethyloxallyl glycine (DMOG), or anoxia (Fig. 4). Similar results were reported by Brunelle et al. (2005) using transient knockdown of the Rieske protein. Additionally, the Rieske knockdown cells showed a significant attenuation of the ROS response to hypoxia as assessed with HSP-FRET (Guzy et al. 2005; Fig. 5). Like the control cells, Rieske knockdown cells were still capable of stabilizing HIF-1{alpha} in response to anoxia, and in response to exogenous oxidants including H2O2, glucose oxidase, and tert-butyl hydroperoxide. These finding provide strong evidence that a functional complex III, and the ROS signal generated by hypoxia, were required for stabilizing HIF-1{alpha} during hypoxia, but were not required for anoxia.


Figure 4
View larger version (29K):
[in this window]
[in a new window]
 
Figure 4.  Stable knockdown of the Rieske iron–sulphur protein (RISP 5K) using short hairpin RNA interference (shRNA) attenuates the increase in oxidant stress during hypoxia, as detected by HSP-FRET in 143B cells
Reprinted from Cell Metabolism, 1·12, Guzy et al., Mitochondrial complex III is required for hyproxia-induced ROS production and HIF-lá stabilization, 401-408 (2005), with permission from Elsevier.

 

Figure 5
View larger version (19K):
[in this window]
[in a new window]
 
Figure 5.  Stable suppression of the Rieske protein (RISP 5K) attenuates the stabilization of HIF-1{alpha} under hypoxic conditions, without altering the response to hypoxia mimetics DFO, cobalt chloride, the prolyl hydroxylase inhibitor DMOG, or anoxia
Reprinted from Cell Metabolism, 1·12, Guzy et al, Mitochondrial complex III is required for hyproxia-induced ROS production and HIF-lá stabilization, 401-408 (2005), with permission from Elsevier.

 
Conceptually, suppression or elimination of other nuclear-encoded genes could also result in an attenuation of ROS production at complex III. For example, a genetic loss of cytochrome c would lock the Rieske iron–sulphur protein and cytochrome c1 in a reduced state. This would prevent oxidation of ubiquinol by the Rieske protein, which would prevent ubisemiquinone generation at the Qo or Qi sites. Hence, ROS production from complex III would be inhibited by loss of cytochrome c. In the mouse model, homozygous targeted knockout of cytochrome c results in embyronic lethality at mid-gestation (Li et al. 2000). However, embryonic cells that are null for cytochrome c can be obtained from embryos prior to dissolution, allowing the creation of embryonic cell (EC) cultures of wild-type, heterozygous and homogygous knockout (null) cells. Mansfield et al. (2005) generated these cell lines, and observed that HIF responses to hypoxia were ablated in the knockout cells, compared with heterozygous or wild-type cells. Again, the null cells retained the responsiveness to anoxia, which does not require mitochondrial function for inhibition of prolyl hydroxylase. Stable reintroduction of cDNA for cytochrome c using a retrovirus restored HIF responses to hypoxia. Finally, the decrease in oxidant stress during hypoxia in the cytochrome c null cells approximated the ROS effects of myxothiazol and stigmatellin in the wild-type cells. Collectively, these findings provide genetic evidence that the mitochondrial electron transport chain, and complex III in particular, are required for the oxidant signal generation during hypoxia, which is required for the stabilization of HIF-1{alpha} and HIF-2{alpha} during hypoxia. During anoxia, neither mitochondrial electron transport nor ROS are required for HIF activation, since the lack of oxygen inhibits prolyl hydroxylase directly.

Unresolved questions for the mitochondrial model

To be sure, additional questions remain unanswered with respect to this model. One important challenge will be to identify the signalling pathway linking the mitochondrial oxidant generation to the regulation of prolyl hydroxylase activity. One possibility is that the ROS act directly at the Fe2+ ion associated with prolyl hydroxylase, rendering the enzyme inactive by preventing its redox cycling (Gerald et al. 2004). Another possibility is that phosphorylation or other post-translational modifications of prolyl hydroxylase mediate changes in its activity.

A second unresolved question relates to the molecular mechanism by which hypoxia causes an increase in ROS production from the electron transport chain. Thermodynamically, it would seem improbable that a decrease in substrate concentration would cause an increase in the rate of a simple first-order reaction. However, other factors may come into play, making the process more complex than it would appear to be. Three potential mechanisms could conceivably contribute to this paradoxical response.

The ‘vectoral transport’ hypothesis is based on the observation that ROS generated by complex III can conceivably be released to either the matrix side of the membrane or towards the intermembrane space (Muller et al. 2004). According to this model, molecular oxygen dissolved in the lipid bilayer might alter the balance affecting ROS release such that relatively more oxidants are released to the intermembrane space direction and relatively less are released to the matrix side. Although the specific mechanism responsible for this shift is not known, an oxygen-dependent change in the direction of ROS release could conceivably explain why oxidant stress increases in the cytosol during hypoxia. Interestingly, such a shift could theoretically account for an increase in cytosolic ROS signalling even if overall ROS production were decreased.

The ‘semiquinone lifetime’ hypothesis proposes that O2 interaction with protein or lipids at complex III could regulate the lifetime of ubisemiquinone at the Qo or Qi sites. If the electron removal from ubisemiquinone by the b cytochromes were slowed during hypoxia, the opportunity for superoxide production could increase significantly even if the concentration of oxygen were less. Any small molecule or drug that alters the kinetics of electron removal from the semiquinone to the b cytochromes can potentially affect superoxide generation, even if the oxygen tension is less.

The ‘oxygen access’ hypothesis suggests that hypoxia might increase the access of O2 to the semiquinone moiety at complex III. For example, if the molecular structure of one or more proteins in complex III were affected by the level of oxygen in the membrane such that the ability of O2 to attack the semiquinone were improved under low-oxygen conditions, this could yield an increase in ROS production despite a decrease in the level of available O2.

A common element in each of these models is the requirement that molecular oxygen, or a change in the concentration of oxygen, affect lipid–protein structure in such a way that the transfer of an electron from ubisemiquinone to O2 is increased despite the lowered concentration of oxygen. For ROS production to increase under hypoxia, either the lifetime of the semiquinone must increase or the relative fraction of ROS released to the intermembrane space versus the matrix must increase. Additional studies are needed to fill these gaps in understanding.

Implications for health and disease

Oxygen sensing is a response that is required for development, and for successful transition from placental to lung gas exchange at the time of birth. Without a functional oxygen sensing system, survival into adulthood would be threatened by an inability to respond to changes in environmental oxygen or to changes in oxygen demand as occur during exercise. Oxygen sensing is also important near the end of life, since tumour growth requires angiogenesis which is triggered by the onset of hypoxia within the tumour. In the future, the discovery of small molecules capable of activating the oxygen sensor potentially will open therapeutic approaches for the treatment of conditions as diverse as obstructive sleep apnoea, high altitude sickness, exercise intolerance and therapeutic revascularization. Novel compounds that selectively inhibit the oxygen sensor without blocking mitochondrial respiration have the potential to block not only tumour angiogenesis, but also the other tumour-facilitating genes regulated by HIF-1 and HIF-2 that promote cell survival, metastasis, glycolysis, cell migration, cell proliferation, extracellular matrix metabolism and cell apoptosis. The wide range of processes that is regulated by the oxygen sensing mechanisms of the cell highlights the fundamental importance of this process in health and disease.

References

Agani FH, Pichiule P, Chavez JC & LaManna JC (2000). The role of mitochondria in the regulation of hypoxia-inducible factor 1 expression during hypoxia. J Biol Chem 275, 35863–35867. (2004).[Abstract/Free Full Text]

Appelhoff RJ, Tian YM, Raval RR, Turley H, Harris AL, Pugh CW et al. (2004). Differential function of the prolyl hydroxylases PHD1, PHD2, and PHD3 in the regulation of hypoxia-inducible factor. J Biol Chem 279, 38458–38465.[Abstract/Free Full Text]

Aprelikova O, Wood M, Tackett S, Chandramouli GV & Barrett JC (2006). Role of ETS transcription factors in the hypoxia-inducible factor-2 target gene selection. Cancer Res 66, 5641–5647.[Abstract/Free Full Text]

Berra E, Benizri E, Ginouves A, Volmat V, Roux D & Pouyssegur J (2003). HIF prolyl-hydroxylase 2 is the key oxygen sensor setting low steady-state levels of HIF-1alpha in normoxia. EMBO J 22, 4082–4090.[CrossRef][Medline]

Bruick RK & McKnight SL (2001). A conserved family of prolyl-4-hydroxylases that modify HIF. Science 294, 1337–1340.[Abstract/Free Full Text]

Brunelle JK, Bell EL, Quesada NM, Vercauteren K, Tiranti V, Zeviani M et al. (2005). Oxygen sensing requires mitochondrial ROS but not oxidative phosphorylation. Cell Metab 1, 409–414.[CrossRef][Medline]

Budinger GRS, Duranteau J, Chandel NS & Schumacker PT (1998). Hibernation during hypoxia in cardiomyocytes: role of mitochondria as the O2 sensor. J Biol Chem 273, 3320–3326.[Abstract/Free Full Text]

Bunn HF & Poyton RO (1996). Oxygen sensing and molecular adaptation to hypoxia. Physiol Rev 76, 839–885.[Abstract/Free Full Text]

Chandel NS, Budinger GRS, Choe SH & Schumacker PT (1997). Cellular respiration during hypoxia: role of cytochrome oxidase as the oxygen sensor in hepatocytes. J Biol Chem 272, 111–112.

Chandel N, Budinger GRS, Kemp RA & Schumacker PT (1995). Inhibition of cytochrome-c oxidase activity during prolonged hypoxia. Am J Physiol 268, L918–L925.[Medline]

Chandel NS, Budinger GRS & Schumacker PT (1996). Molecular oxygen modulates cytochrome c oxidase function. J Biol Chem 271, 18672–18677.[Abstract/Free Full Text]

Chandel NS, Maltepe E, Goldwasser E, Mathieu CE, Simon MC & Schumacker PT (1998). Mitochondrial reactive oxygen species trigger hypoxia-induced transcription. Proc Natl Acad Sci U S A 95, 11715–11720.[Abstract/Free Full Text]

Chandel NS & Schumacker PT (1999). Cells depleted of mitochondrial DNA ({rho}0) yield insight into physiological mechanisms. FEBS Lett 454, 173–176.[CrossRef][Medline]

Clifton IJ, Hsueh LC, Baldwin JE, Harlos K & Schofield CJ (2001). Structure of proline 3-hydroxylase – evolution of the family of 2-oxoglutarate dependent oxygenases. Eur J Biochem 268, 6625–6636.[Medline]

Cockman ME, Masson N, Mole DR, Jaakkola P, Chang GW, Clifford SC et al. (2000). Hypoxia inducible factor-alpha binding and ubiquitylation by the von Hippel-Lindau tumor suppressor protein. J Biol Chem 275, 25733–25741.[Abstract/Free Full Text]

DeHaan C, Habibi-Nazhad B, Yan E, Salloum N, Parliament M & lalunis-Turner J (2004). Mutation in mitochondrial complex I ND6 subunit is associated with defective response to hypoxia in human glioma cells. Mol Cancer 3, 19.[CrossRef][Medline]

Duranteau J, Chandel NS, Kulisz A, Shao Z & Schumacker PT (1998). Intracellular signaling by reactive oxygen species during hypoxia in cardiomyocytes. J Biol Chem 273, 11619–11624.[Abstract/Free Full Text]

Ebert BL & Bunn HF (1998). Regulation of transcription by hypoxia requires a multiprotein complex that includes hypoxia-inducible factor 1, an adjacent transcription factor, and p300/CREB binding protein. Mol Cell Biol 18, 4089–4096.[Abstract/Free Full Text]

Epstein AC, Gleadle JM, McNeill LA, Hewitson KS, O'Rourke J, Mole DR et al. (2001). C. elegans EGL-9 and mammalian homologs define a family of dioxygenases that regulate HIF by prolyl hydroxylation. Cell 107, 43–54.[CrossRef][Medline]

Erecinska M & Wilson DF (1982). Regulation of cellular energy metabolism. J Membr Biol 70, 1–14.[CrossRef][Medline]

Gerald D, Berra E, Frapart YM, Chan DA, Giaccia AJ, Mansuy D et al. (2004). JunD reduces tumor angiogenesis by protecting cells from oxidative stress. Cell 118, 781–794.[CrossRef][Medline]

Gleadle JM, Ebert BL, Firth JD & Ratcliffe PJ (1995a). Regulation of angiogenic growth factor expression by hypoxia, transition metals, and chelating agents. Am J Physiol 268, C1362–C1368.[Medline]

Gleadle JM, Ebert BL & Ratcliffe PJ (1995b). Diphenylene iodonium inhibits the induction of erythropoietin and other mammalian genes by hypoxia. Eur J Biochem 234, 92–99.[Medline]

Goldwasser E, Beru N & Smith D (1989). Erythropoietin: the primary regulator of red cell formation. In Handbook of Experimental Pharmacology, Peptide Growth Factors and Their Regulation, ed. Sporn MB & Roberts AB, pp. 747–770. Springer-Verlag, Berlin, Heidelberg.

Graf PCF, Martinez-Yamout M, VanHaerents S, Lilie H, Dyson HJ & Jakob U (2004). Activation of the redox-regulated chaperone Hsp33 by domain unfolding. J Biol Chem 279, 20529–20538.[Abstract/Free Full Text]

Greijer AE, van der Groep P, Kemming D, Shvarts A, Semenza GL, Meijer GA, van de Wiel MA, Belien JA, van Diest PJ & van der WE (2005). Up-regulation of gene expression by hypoxia is mediated predominantly by hypoxia-inducible factor 1 (HIF-1). J Pathol 206, 291–304.[CrossRef][Medline]

Grynkiewicz G, Poenie M & Tsien RY (1985). A new generation of Ca2+ indicators with greatly improved fluorescence properties. J Biol Chem 260, 3440–3450.[Abstract/Free Full Text]

Gunton JE, Kulkarni RN, Yim S, Okada T, Hawthorne WJ, Tseng YH et al. (2005). Loss of ARNT/HIF1beta mediates altered gene expression and pancreatic-islet dysfunction in human type 2 diabetes. Cell 122, 337–349.[CrossRef][Medline]

Guzy RD, Hoyos B, Robin E, Chen H, Liu L, Mansfield KD et al. (2005). Mitochondrial complex III is required for hypoxia-induced ROS production and cellular oxygen sensing. Cell Metab 1, 401–408.[CrossRef][Medline]

Hirsilae M, Koivunen P, Guenzler V, Kivirikko KI & Myllyharju J (2003). Characterization of the human prolyl 4-hydroxylases that modify the hypoxia-inducible factor. J Biol Chem 278, 30772–30780.[Abstract/Free Full Text]

Hockberger PE, Skimina TA, Centonze VE, Lavin C, Chu S, Dadras S et al. (1999). Activation of flavin-containing oxidases underlies light-induced production of H2O2 in mammalian cells. Proc Natl Acad Sci U S A 96, 6255–6260.[Abstract/Free Full Text]

Hu CJ, Wang LY, Chodosh LA, Keith B & Simon MC (2003). Differential roles of hypoxia-inducible factor 1alpha (HIF-1alpha) and HIF-2alpha in hypoxic gene regulation. Mol Cell Biol 23, 9361–9374.[Abstract/Free Full Text]

Huang LE, Arany Z, Livingston DM & Bunn HF (1996). Activation of hypoxia-inducible transcription factor depends primarily upon redox-sensitive stabilization of its {alpha} subunit. J Biol Chem 271, 32253–32259.[Abstract/Free Full Text]

Huang LE, Gu J, Schau M & Bunn HF (1998). Regulation of hypoxia-inducible factor 1{alpha} is mediated by an O2-dependent degradation domain via the ubiquitin-proteasome pathway. Proc Natl Acad Sci U S A 95, 7987–7992.[Abstract/Free Full Text]

Hunte C, Palsdottir H & Trumpower BL (2003). Protonmotive pathways and mechanisms in the cytochrome bc1 complex. FEBS Lett 545, 39–46.[CrossRef][Medline]

Ivan M, Haberberger T, Gervasi DC, Michelson KS, Guenzler V, Kondo K et al. (2002). Biochemical purification and pharmacological inhibition of a mammalian prolyl hydroxylase acting on hypoxia-inducible factor. Proc Natl Acad Sci U S A 99, 13459–13464.[Abstract/Free Full Text]

Ivan M, Kondo K, Yang H, Kim W, Valiando J, Ohh M et al. (2001). HIFalpha targeted for VHL-mediated destruction by proline hydroxylation: implications for O2 sensing. Science 292, 464–468.[Abstract/Free Full Text]

Iwata S, Lee JW, Okada K, Lee JK, Iwata M, Rasmussen B et al. (1998). Complete structure of the 11-subunit bovine mitochondrial cytochrome bc1 complex. Science 281, 64–71.[Abstract/Free Full Text]

Iyer NV, Kotch LE, Agani F, Leung SW, Laughner E, Wenger RH et al. (1998). Cellular and developmental control of O2 homeostasis by hypoxia-inducible factor 1 alpha. Genes Dev 12, 149–162.[Abstract/Free Full Text]

Jaakkola P, Mole DR, Tian YM, Wilson MI, Gielbert J, Gaskell SJ et al. (2001). Targeting of HIF-alpha to the von Hippel-Lindau ubiquitylation complex by O2-regulated prolyl hydroxylation. Science 292, 468–472.[Abstract/Free Full Text]

Jakob U, Muse W, Eser M & Bardwell JC (1999). Chaperone activity with a redox switch. Cell 96, 341–352.[CrossRef][Medline]

Jensen PK (1966). Antimycin-insensitive oxidation of succinate and reduced nicotinamide-adenine dinucleotide in electron-tranport particles. Biochim Biophys Acta 122, 157–166.[Medline]

Jiang BH, Semenza GL, Bauer C & Marti HH (1996). Hypoxia-inducible factor 1 levels vary exponentially over a physiologically relevant range of O2 tension. Am J Physiol 271, C1172–C1180.[Medline]

Kaelin WG Jr (2003). The von Hippel-Lindau gene, kidney cancer, and oxygen sensing. J Am Soc Nephrol 14, 2703–2711.[Abstract/Free Full Text]

Kaelin WG Jr (2005). ROS: really involved in oxygen sensing. Cell Metab 1, 357–358.[CrossRef][Medline]

King MP & Attardi G (1989). Human cells lacking mtDNA: repopulation with exogenous mitochondria by complementation. Science 246, 500–503.[Abstract/Free Full Text]

Land SC, Buck LT & Hochachka PW (1993). Response of protein synthesis to anoxia and recovery in anoxia-tolerant hepatocytes. Am J Physiol 265, R41–R48.[Medline]

Li K, Li Y, Shelton JM, Richardson JA, Spencer E, Chen ZJ et al. (2000). Cytochrome c deficiency causes embryonic lethality and attenuates stress-induced apoptosis. Cell 101, 389–399.[CrossRef][Medline]

Maltepe E, Schmidt JV, Baunoch D, Bradfield CA & Simon MC (1997). Abnormal angiogenesis and responses to glucose and oxygen deprivation in mice lacking the protein ARNT. Nature 386, 403–407.[CrossRef][Medline]

Mansfield KD, Guzy RD, Pan Y, Young RM, Cash TP et al. (2005). Mitochondrial dysfunction resulting from loss of cytochrome c impairs cellular oxygen sensing and hypoxic HIF-alpha activation. Cell Metab 1, 393–399.[CrossRef][Medline]

Maxwell PH, Pugh CW & Ratcliffe PJ (1993). Inducible operation of the erythropoietin 3' enhancer in multiple cell lines: evidence for a widespread oxygen-sensing mechanism. Proc Natl Acad Sci U S A 90, 2423–2427.[Abstract/Free Full Text]

Maxwell PH, Wiesener MS, Chang GW, Clifford SC, Vaux EC, Cockman ME et al. (1999). The tumour suppressor protein VHL targets hypoxia-inducible factors for oxygen-dependent proteolysis. Nature 399, 271–275.[CrossRef][Medline]

Mole DR, Maxwell PH, Pugh CW & Ratcliffe PJ (2001). Regulation of HIF by the von Hippel-Lindau tumour suppressor: implications for cellular oxygen sensing. IUBMB Life 52, 43–47.[Medline]

Muller FL, Liu Y & Van Remmen H (2004). Complex III releases superoxide to both sides of the inner mitochondrial membrane. J Biol Chem 279, 49064–49073.[Abstract/Free Full Text]

Park SK, Dadak AM, Haase VH, Fontana L, Giaccia AJ & Johnson RS (2003). Hypoxia-induced gene expression occurs solely through the action of hypoxia-inducible factor 1alpha (HIF-1alpha): role of cytoplasmic trapping of HIF-2alpha. Mol Cell Biol 23, 4959–4971.[Abstract/Free Full Text]

Pugh CW, O'Rourke JF, Nagao M, Gleadle JM & Ratcliffe PJ (1997). Activation of hypoxia-inducible factor-1; definition of regulatory domains within the alpha subunit. J Biol Chem 272, 11205–11214.[Abstract/Free Full Text]

Rana M, de Coo I, Diaz F, Smeets H & Moracs CT (2000). An out-of-frame cytochrome b gene deletion from a patient with parkinsonism is associated with impaired complex III assembly and an increase in free radical production. Ann Neurol 48, 774–781.[CrossRef][Medline]

Rumsey WL, Schlosser C, Nuutinen EM, Robiolio M & Wilson DF (1990). Cellular energetics and the oxygen dependence of respiration in cardiac myocytes isolated from adult rat. J Biol Chem 265, 15392–15399.[Abstract/Free Full Text]

Ryan HE, Lo J & Johnson RS (1998). HIF-1alpha is required for solid tumor formation and embryonic vascularization. EMBO J 17, 3005–3015.[CrossRef][Medline]

Salceda S & Caro J (1997). Hypoxia-inducible factor 1{alpha} (HIF-1{alpha}) protein is rapidly degraded by the ubiquitin-proteasome system under normoxic conditions. J Biol Chem 272, 22642–22647.[Abstract/Free Full Text]

Saraste M (1999). Oxidative phosphorylation at the fin de siecle. Science 283, 1488–1493.[Abstract/Free Full Text]

Schroedl C, McClintock DS, Budinger GRS & Chandel NS (2002). Hypoxic but not anoxic stabilization of HIF-1alpha requires mitochondrial reactive oxygen species. Am J Physiol Lung Cell Mol Physiol 283, L922–L931.[Abstract/Free Full Text]

Schumacker PT (2005). Hypoxia-inducible factor-1 (HIF-1). Crit Care Med 33, S423–S425.[CrossRef][Medline]

Semenza GL (1999). Perspectives on oxygen sensing. Cell 98, 281–284.[CrossRef][Medline]

Semenza GL (2000). HIF-1: mediator of physiological and pathophysiological responses to hypoxia. J Appl Physiol 88, 1474–1480.[Abstract/Free Full Text]

Semenza GL, Nejfelt MK, Chi SM & Antonarakis SE (1991). Hypoxia-inducible nuclear factors bind to an enhancer element located 3' to the human erythropoietin gene. Proc Natl Acad Sci U S A 88, 5680–5684.[Abstract/Free Full Text]

Semenza GL, Roth PH, Fang H-M & Wang GL (1994). Transcriptional regulation of genes encoding glycolytic enzymes by hypoxia-inducible factor 1. J Biol Chem 269, 23757–23763.[Abstract/Free Full Text]

Semenza GL & Wang GL (1992). A nuclear factor induced by hypoxia via de novo protein synthesis binds to the human erythropoietin gene enhancer at a site required for transcriptional activation. Molec Cell Biol 12, 5447–5454.[Abstract/Free Full Text]

Sowter HM, Raval R, Moore J, Ratcliffe PJ & Harris AL (2003). Predominant role of hypoxia-inducible transcription factor (Hif)-1alpha versus Hif-2alpha in regulation of the transcriptional response to hypoxia. Cancer Res 63, 6130–6134.[Abstract/Free Full Text]

Srinivas V, Leshchinsky I, Sang N, King MP, Minchenko A & Caro J (2001). Oxygen sensing and HIF-1 activation does not require an active mitochondrial respiratory chain electron-transfer pathway. J Biol Chem 276, 21995–21998.[Abstract/Free Full Text]

Sun H & Trumpower BL (2003). Superoxide anion generation by the cytochrome bc1 complex. Arch Biochem Biophys 419, 198–206.[CrossRef][Medline]

Talks KL, Turley H, Gatter KC, Maxwell PH, Pugh CW et al. (2000). The expression and distribution of the hypoxia-inducible factors HIF-1alpha and HIF-2alpha in normal human tissues, cancers, and tumor-associated macrophages. Am J Pathol 157, 411–421.[Abstract/Free Full Text]

Tanimoto K, Makino Y, Pereira T & Poellinger L (2000). Mechanism of regulation of the hypoxia-inducible factor-lalpha by the von Hippel-Lindau tumor suppressor protein. EMBO J 19, 4298–4309.[CrossRef][Medline]

Trumpower BL (2002). A concerted, alternating sites mechanism of ubiquinol oxidation by the dimeric cytochrome bc1 complex. Biochim Biophys Acta 1555, 166–173.[Medline]

Turrens JF (2003). Mitochondrial formation of reactive oxygen species. J Physiol 552, 335–344.[Abstract/Free Full Text]

Turrens JF, Alexandre A & Lehninger AL (1985). Ubisemiquinone is the electron donor for superoxide formation by complex III of heart mitochondria. Arch Biochem Biophys 237, 408–414.[CrossRef][Medline]

Vanden Hoek TL, Becker LB, Shao Z, Li C & Schumacker PT (1998). Reactive oxygen species released from mitochondria during brief hypoxia induce preconditioning in cardiomyocytes. J Biol Chem 273, 18092–18098.[Abstract/Free Full Text]

Vaux EC, Metzen E, Yeates KM & Ratcliffe PJ (2001). Regulation of hypoxia-inducible factor is preserved in the absence of a functioning mitochondrial respiratory chain. Blood 98, 296–302.[Abstract/Free Full Text]

Wallace DC (2001). Mouse models for mitochondrial disease. Am J Med Genet 106, 71–93.[CrossRef][Medline]

Wang V, Davis DA, Haque M, Huang LE & Yarchoan R (2005). Differential gene up-regulation by hypoxia-inducible factor-1alpha and hypoxia-inducible factor-2alpha in HEK293T cells. Cancer Res 65, 3299–3306.[Abstract/Free Full Text]

Wang GL & Semenza GL (1993). General involvement of hypoxia-inducible factor 1 in transcriptional response to hypoxia. Proc Natl Acad Sci U S A 90, 4304–4308.[Abstract/Free Full Text]

Wang GL & Semenza GL (1995). Purification and characterization of hypoxia-inducible factor 1. J Biol Chem 270, 1230–1237.[Abstract/Free Full Text]

Waypa GB, Marks JD, Mack MM, Boriboun C, Mungai PT & Schumacker PT (2002). Mitochondrial reactive oxygen species trigger calcium increases during hypoxia in pulmonary arterial myocytes. Circ Res 91, 719–726.[Abstract/Free Full Text]

Wilson DF, Erecinska M, Drown C & Silver IA (1979). The oxygen dependence of cellular energy metabolism. Arch Biochem Biophys 195, 485–493.[CrossRef][Medline]

Wilson DF, Rumsey WL, Green TJ & Vanderkooi JM (1988). The oxygen dependence of mitochondrial oxidative phosphorylation measured by a new optical method for measuring oxygen concentration. J Biol Chem 263, 2712–2718.[Abstract/Free Full Text]

Wykoff CC, Pugh CW, Maxwell PH, Harris AL & Ratcliffe PJ (2000). Identification of novel hypoxia dependent and independent target genes of the von Hippel-Lindau (VHL) tumour suppressor by mRNA differential expression profiling. Oncogene 19, 6297–6305.[CrossRef][Medline]

Wykoff CC, Sotiriou C, Cockman ME, Ratcliffe PJ, Maxwell P et al. (2004). Gene array of VHL mutation and hypoxia shows novel hypoxia-induced genes and that cyclin D1 is a VHL target gene. Br J Cancer 90, 1235–1243.[CrossRef][Medline]

Yu CA, Xia D, Kim H, Deisenhofer J, Zhang L, Kachurin AM & Yu L (1998). Structural basis of functions of the mitochondrial cytochrome bc1 complex. Biochim Biophys Acta 1365, 151–158.[Medline]

Acknowledgements

This work was supported by the following grants from the National Heart, Lung and Blood Institute, U.S.P.H.S.: HL35440, HL32646, and HL079650




This article has been cited by other articles:


Home page